Package: systemPipeRdata
Title: systemPipeRdata: Workflow templates and sample data
Version: 2.8.0
Date: 2023-10-10
Author: Thomas Girke
Maintainer: Thomas Girke <thomas.girke@ucr.edu>
biocViews: Genetics, Infrastructure, DataImport, Sequencing, RNASeq,
        ChIPSeq, MethylSeq, SNP, GeneExpression, Coverage,
        GeneSetEnrichment, Alignment, QualityControl, ImmunoOncology,
        RiboSeq, WorkflowStep
Description: systemPipeRdata is a helper package to generate with a
        single command NGS workflow templates that are intended to be
        used by its parent package systemPipeR. The latter is an
        environment for building end-to-end analysis pipelines with
        automated report generation for next generation sequence (NGS)
        applications such as RNA-Seq, RIBO-Seq, ChIP-Seq, VAR-Seq and many
        others. Detailed examples for using systemPipeRdata are given
        in systemPipeR's overview vignette.
Imports: methods, Biostrings, BiocGenerics, jsonlite, remotes
Suggests: GenomicFeatures, GenomicRanges, IRanges, Rsamtools,
        ShortRead, rtracklayer, RUnit, BiocStyle, knitr, rmarkdown,
        systemPipeR
VignetteBuilder: knitr
License: Artistic-2.0
NeedsCompilation: no
URL: https://github.com/tgirke/systemPipeRdata, https://systempipe.org/
git_url: https://git.bioconductor.org/packages/systemPipeRdata
git_branch: RELEASE_3_19
git_last_commit: b03c247
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-05-02
Packaged: 2024-05-02 15:24:16 UTC; biocbuild
Built: R 4.4.0; ; 2024-05-07 07:07:36 UTC; unix
